ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs3788863 dbSNP Ensembl
Location	ChrX:43524765(Fwd)
Variant Alleles	T/A
Ancestral Allele	A
Functional Annotation	intron_variant; nc_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000542639; ENST00000497485; ENST00000338702) nc_transcript_variant(ENST00000497485)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Guan L, 2009			single SNP association analyses: Nominal P-value=0.031, Empi...... single SNP association analyses: Nominal P-value=0.031, Empirical P-value=0.051 for ADHD; Nominal P-value=0.036, Empirical P-value=0.052 for ADHD-I More...	achieve nominal significance for ADHD and ADHD-I achieve nominal significance for ADHD and ADHD-I	Significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
MAOA	monoamine oxidase A	Xp11.4-p11.3	20(13/7/0)

Genes from other sources (count: 0)

SNPs in LD with rs3788863 (count: 97) View in gBrowse (chrX:43403488..43608682 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 18)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs1137070	nc_transcript_variant; non_coding_exon_variant; synonymous_variant	4(3/1/0)	0.815[CEU]; 0.844[CHD]; 0.82[GIH]; 0.814[JPT]; 0.822[TSI]
rs5905702	intron_variant; nc_transcript_variant	1(0/1/0)	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.967[GIH]; 0.931[JPT]; 0.935[MEX]; 0.962[TSI]
rs2239448	intron_variant; upstream_gene_variant	3(3/0/0)	0.815[CEU]; 0.814[JPT]
rs2072744	intron_variant; upstream_gene_variant	1(1/0/0)	0.858[CHB]; 0.933[JPT]
rs5905859	downstream_gene_variant; intron_variant	2(2/0/0)	0.858[CHB]; 0.866[CHD]; 0.862[JPT]
rs4570308	upstream_gene_variant	1(1/0/0)	1.0[CEU]; 1.0[CHB]; 0.931[JPT]
rs3027400	downstream_gene_variant; intron_variant	3(3/0/0)	0.877[CEU]; 0.858[CHB]; 0.844[CHD]; 0.872[GIH]; 0.933[JPT]; 0.809[MEX]
rs2205718	intron_variant	1(0/1/0)	0.873[CEU]; 0.852[CHB]; 0.844[CHD]; 0.868[GIH]; 0.93[JPT]; 0.809[MEX]; 0.815[TSI]
rs2283724	intron_variant; nc_transcript_variant	1(0/1/0)	1.0[CHB]; 0.933[CHD]; 0.842[GIH]; 1.0[JPT]; 0.819[LWK]; 0.935[MEX]; 0.861[TSI]; 0.937[YRI]
rs2235186	downstream_gene_variant; intron_variant	1(1/0/0)	0.877[CEU]; 0.858[CHB]; 0.844[CHD]; 0.872[GIH]; 0.933[JPT]; 0.809[MEX]
rs6610845	intron_variant; nc_transcript_variant	1(0/1/0)	0.858[CHB]; 0.872[CHD]; 0.931[JPT]
rs979605	intron_variant; upstream_gene_variant	2(0/2/0)	0.877[CEU]; 0.858[CHB]; 0.843[CHD]; 0.872[GIH]; 0.814[JPT]
rs6323	downstream_gene_variant; synonymous_variant	3(0/3/0)	0.877[CEU]; 0.858[CHB]; 0.872[CHD]; 0.872[GIH]; 0.933[JPT]; 0.809[MEX]
rs3788862	intron_variant; nc_transcript_variant	1(1/0/0)	1.0[CHB]; 0.931[JPT]; 1.0[YRI]
rs3027407	3_prime_UTR_variant; downstream_gene_variant	3(2/1/0)	0.815[CEU]; 0.933[JPT]
rs12843268	intron_variant; nc_transcript_variant	3(2/1/0)	0.877[CEU]; 0.858[CHB]; 0.902[CHD]; 0.806[GIH]; 0.933[JPT]
rs2235185	intron_variant	1(1/0/0)	0.877[CEU]; 0.858[CHB]; 0.844[CHD]; 0.872[GIH]; 0.933[JPT]; 0.809[MEX]
rs5953210	upstream_gene_variant	1(1/0/0)	1.0[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.967[GIH]; 0.931[JPT]; 1.0[LWK]; 1.0[MEX]; 1.0[MKK]; 0.962[TSI]; 1.0[YRI]

LD-proxies (count: 79)

rs_ID	Functional Annotation	r²[population]
rs4986544		0.876[CEU]
rs4986545		0.939[CEU]; 0.886[TSI]
rs5951043		0.939[CEU]
rs6520894	intron_variant; nc_transcript_variant	0.924[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 1.0[MEX]; 0.955[MKK]; 1.0[TSI]; 1.0[YRI]
rs5951036		0.876[CEU]
rs5951031		0.876[CEU]; 0.85[TSI]
rs5951055		0.939[CEU]
rs929094		0.939[CEU]
rs5953385	intron_variant; nc_transcript_variant	0.924[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 0.935[MEX]; 0.931[MKK]; 1.0[TSI]; 1.0[YRI]
rs4986548		0.846[ASW]; 0.939[CEU]; 1.0[LWK]; 0.821[MKK]; 0.886[TSI]
rs5906883	intron_variant; nc_transcript_variant	1.0[CEU]; 0.931[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.809[MEX]; 1.0[TSI]
rs5906938	intron_variant; nc_transcript_variant	0.924[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 0.935[MEX]; 0.911[MKK]; 1.0[TSI]; 1.0[YRI]
rs5951054		0.939[CEU]; 0.804[LWK]; 0.886[TSI]
rs28401570	intron_variant; nc_transcript_variant	0.877[CEU]; 0.858[CHB]; 0.872[CHD]; 0.872[GIH]; 0.933[JPT]; 0.809[MEX]
rs1465107	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]; 1.0[YRI]
rs4986546		0.939[CEU]; 0.886[TSI]
rs2410867		0.876[CEU]
rs5951040		0.876[CEU]
rs4239988		0.938[CEU]; 0.86[YRI]
rs3859959		0.924[ASW]; 0.937[CEU]; 0.955[LWK]; 0.801[MKK]; 0.886[TSI]
rs1339778		0.934[CEU]
rs5906898		0.939[CEU]
rs5951032		0.819[CEU]; 0.85[TSI]
rs3810709	intron_variant; nc_transcript_variant	0.857[CHB]; 0.871[CHD]; 0.931[JPT]
rs2000019		0.939[CEU]
rs5906729	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs12558025		1.0[CEU]; 0.873[YRI]
rs6610814		0.939[CEU]; 0.886[TSI]
rs3027397	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs12015012		0.876[CEU]; 0.85[TSI]
rs979606	intron_variant; upstream_gene_variant	0.877[CEU]; 0.858[CHB]; 0.844[CHD]; 0.872[GIH]; 0.814[JPT]; 0.809[MEX]
rs1339779		0.939[CEU]; 1.0[LWK]; 0.886[TSI]
rs3859958		1.0[CEU]; 0.873[YRI]
rs3027410	downstream_gene_variant	0.803[CEU]; 0.843[CHD]; 0.814[JPT]; 0.817[TSI]
rs4986516		1.0[CEU]
rs3027401	downstream_gene_variant; intron_variant	0.877[CEU]; 0.858[CHB]; 0.844[CHD]; 0.872[GIH]; 0.933[JPT]; 0.809[MEX]
rs5906261		1.0[CEU]
rs5951048		0.937[CEU]
rs743944		0.883[CEU]
rs1800659	intron_variant; nc_transcript_variant	0.937[CEU]; 0.858[CHB]; 0.902[CHD]; 0.806[GIH]; 0.933[JPT]
rs1465108	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]
rs12862958		0.876[CEU]; 0.85[TSI]
rs4986551		0.834[ASW]; 0.939[CEU]; 1.0[LWK]; 0.884[TSI]
rs2283725	intron_variant; nc_transcript_variant	1.0[CHB]; 0.933[CHD]; 0.842[GIH]; 1.0[JPT]; 0.935[MEX]; 0.861[TSI]
rs3027396	intron_variant; nc_transcript_variant	1.0[CHB]; 0.933[CHD]; 0.841[GIH]; 1.0[JPT]; 0.935[MEX]; 0.861[TSI]
rs5951035		0.869[CEU]
rs5951030		0.87[CEU]
rs12838290		0.876[CEU]; 0.85[TSI]
rs4986550		0.846[ASW]; 0.939[CEU]; 1.0[LWK]; 0.821[MKK]; 0.886[TSI]
rs909525	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[CHD]; 0.842[GIH]; 1.0[JPT]; 0.819[LWK]; 0.935[MEX]; 0.861[TSI]; 0.937[YRI]
rs5906974	intron_variant; nc_transcript_variant	0.937[CEU]; 1.0[CHB]; 1.0[JPT]
rs4824392		0.939[CEU]
rs5905613		1.0[CEU]; 0.923[TSI]
rs5951049		0.846[ASW]; 0.939[CEU]; 1.0[LWK]; 0.821[MKK]; 0.886[TSI]
rs6610813		0.939[CEU]; 0.886[TSI]
rs916359		0.876[CEU]; 0.849[TSI]
rs4301558	upstream_gene_variant	1.0[CEU]; 1.0[CHB]; 0.931[JPT]; 1.0[YRI]
rs3027398	intron_variant; nc_transcript_variant	1.0[CHB]; 0.933[CHD]; 0.842[GIH]; 1.0[JPT]; 0.875[MEX]; 0.861[TSI]
rs5906957	intron_variant; nc_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2072743	intron_variant; upstream_gene_variant	0.858[CHB]; 0.842[CHD]; 0.933[JPT]
rs5906154		1.0[CEU]; 0.962[TSI]
rs5906695		0.876[CEU]
rs5991481		0.841[ASW]; 0.881[CEU]; 1.0[LWK]; 0.821[MKK]; 0.886[TSI]
rs929096		0.813[CEU]; 0.85[TSI]
rs12862913		0.876[CEU]; 0.846[TSI]
rs6610823		0.939[CEU]; 0.886[TSI]
rs28556796	intron_variant; nc_transcript_variant	0.877[CEU]; 0.858[CHB]; 0.872[CHD]; 0.872[GIH]; 0.933[JPT]; 0.809[MEX]
rs1339776		0.939[CEU]
rs1538642		0.939[CEU]
rs5991694		0.939[CEU]
rs6610846	intron_variant; nc_transcript_variant	0.858[CHB]; 0.872[CHD]; 0.933[JPT]
rs2310820		1.0[ASW]; 1.0[CEU]; 1.0[LWK]; 0.865[MKK]; 0.924[TSI]; 0.873[YRI]
rs4083948		0.939[CEU]
rs5951037		0.876[CEU]
rs5951038		0.876[CEU]
rs2064070	downstream_gene_variant	0.815[CEU]; 0.844[CHD]; 0.814[JPT]; 0.822[TSI]
rs5951044		0.939[CEU]
rs1339777		0.939[CEU]
rs5906893	intron_variant; nc_transcript_variant	0.924[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[LWK]; 0.935[MEX]; 0.952[MKK]; 1.0[TSI]; 1.0[YRI]