ADHDgene Database

SNP Report

Basic Info

Name	rs4075482 dbSNP Ensembl
Location	Chr17:79074548(Fwd)
Variant Alleles	C/A
Ancestral Allele	C
Functional Annotation	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant.
Consequence to Transcript	NMD_transcript_variant(ENST00000572329; ENST00000574804) downstream_gene_variant(ENST00000576364; ENST00000573017; ENST00000572918; ENST00000573659; ENST00000575958) intron_variant(ENST00000428708; ENST00000321280; ENST00000572329; ENST00000435091; ENST00000575245; ENST00000575712; ENST00000572073; ENST00000574804; ENST00000574027; ENST00000573677; ENST00000576756; ENST00000575841; ENST00000577097; ENST00000392411; ENST00000576225; ENST00000416299; ENST00000321300) nc_transcript_variant(ENST00000574027; ENST00000577097; ENST00000576225) upstream_gene_variant(ENST00000576995; ENST00000572498)
No. of Studies	1 (significant: 0; non-significant: 1; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Ribases M, 2009(a)			Case-control test: P-value=0.29 for genotype analysis, P-val...... Case-control test: P-value=0.29 for genotype analysis, P-value=0.17 for allele analysis in Spanish adult ADHD group; P-value=0.13 for genotype analysis, P-value=0.05 for allele analysis in Spanish childhood ADHD group. More...	No association was found. No association was found.	Non-significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
BAIAP2	BAI1-associated protein 2	17q25	1(1/0/0)

SNPs in LD with rs4075482 (count: 9) View in gBrowse (chr17:79053078..79087537 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.


rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]
rs4969245	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	1(0/1/0)	0.908[CHB]; 0.908[JPT]

rs_ID	Functional Annotation	r²[population]
rs8066330	NMD_transcript_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.908[CHB]; 0.908[JPT]
rs8080815	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant	0.908[CHB]; 0.908[JPT]
rs4075483	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.918[CEU]; 0.954[CHB]; 1.0[JPT]
rs3935648	downstream_gene_variant; intron_variant; nc_transcript_variant	0.911[CHB]; 0.91[JPT]
rs4969377	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.911[CHB]; 0.912[JPT]
rs4076427	downstream_gene_variant; intron_variant; nc_transcript_variant	0.924[CEU]; 0.956[CHB]; 1.0[JPT]
rs11664	3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant	0.908[CHB]; 0.908[JPT]
rs4969381	NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; upstream_gene_variant	0.908[CHB]; 0.908[JPT]