ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs5934740 dbSNP Ensembl
Location	ChrX:7157652(Fwd)
Variant Alleles	G/A
Ancestral Allele	A
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000217961)
No. of Studies	2 (significant: 0; non-significant: 2; trend: 0)
Source	Literature-origin

SNP related studies (count: 2)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Brookes KJ, 2010			TDT P-value=0.33, OR=1.07 TDT P-value=0.33, OR=1.07	no significant association no significant association	Non-significant
Brookes KJ, 2008(b)			TDT P-value=0.41, OR=1.15 TDT P-value=0.41, OR=1.15	not significantly associated not significantly associated	Non-significant

SNP related genes (count: 1)

Literature-origin genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
STS	steroid sulfatase (microsomal), isozyme S	Xp22.32	3(2/1/0)

Genes from other sources (count: 0)

SNPs in LD with rs5934740 (count: 129) View in gBrowse (chrX:6959183..7307440 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 4)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs6639786	intron_variant	1(1/0/0)	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[TSI]
rs1473666	downstream_gene_variant; intron_variant; nc_transcript_variant	1(0/1/0)	1.0[CHD]; 0.862[GIH]
rs4403552	intron_variant	1(0/1/0)	0.932[CHB]; 0.821[CHD]; 0.929[JPT]
rs5934769	intron_variant	1(1/0/0)	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]

LD-proxies (count: 125)

rs_ID	Functional Annotation	r²[population]
rs1474467	downstream_gene_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs11095350	intron_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 0.969[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs802884		0.808[CEU]; 0.939[CHD]; 1.0[GIH]; 0.82[MEX]; 0.938[TSI]
rs7889414	intron_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs4132409	intron_variant	1.0[CEU]; 1.0[CHB]; 0.969[CHD]; 0.963[GIH]; 1.0[JPT]; 0.937[MEX]; 0.969[TSI]
rs6530056	intron_variant; nc_transcript_variant; upstream_gene_variant	0.899[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 0.937[TSI]
rs5978836	downstream_gene_variant; intron_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs4830410		0.947[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs6530060		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs5978405	intron_variant	1.0[CEU]; 0.932[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 0.969[TSI]
rs802897		0.948[CEU]; 1.0[CHB]; 1.0[JPT]
rs2694752		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.834[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs7050772	intron_variant; nc_transcript_variant	0.899[CEU]; 1.0[CHB]; 0.927[JPT]
rs707762		0.948[CEU]; 1.0[CHB]; 1.0[JPT]
rs5934678		1.0[CEU]; 0.923[CHB]; 0.899[JPT]
rs6530053	intron_variant; nc_transcript_variant	0.899[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs1967630		1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs802907		0.948[CEU]; 1.0[CHB]; 1.0[JPT]
rs4830578	intron_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.862[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs5979051	downstream_gene_variant; upstream_gene_variant	0.948[CEU]; 1.0[CHB]; 1.0[JPT]
rs2379204	downstream_gene_variant; intron_variant	0.847[CEU]; 0.932[CHB]; 0.927[JPT]
rs869505	intron_variant; nc_transcript_variant	0.899[CEU]; 1.0[CHB]; 0.927[JPT]
rs3923341	intron_variant	0.923[ASW]; 1.0[CEU]; 0.932[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 0.969[TSI]
rs6530049	intron_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs12388823	intron_variant; nc_transcript_variant	0.899[CEU]; 1.0[CHB]; 1.0[CHD]; 0.856[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs1880880	intron_variant; nc_transcript_variant; upstream_gene_variant	0.899[CEU]; 1.0[CHB]; 0.969[CHD]; 0.834[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs802909		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.834[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs802889		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.926[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs6530059		0.948[CEU]; 1.0[CHB]; 1.0[JPT]
rs2098072	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 0.963[GIH]; 1.0[JPT]; 0.937[MEX]; 0.91[TSI]
rs802916		0.943[CEU]; 1.0[CHB]; 1.0[JPT]
rs10458	3_prime_UTR_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.923[JPT]; 1.0[TSI]
rs5978279	intron_variant; nc_transcript_variant	0.899[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs1852456		0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs802903		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs5934937	intron_variant	1.0[CEU]; 0.932[CHB]; 1.0[JPT]
rs6530047	intron_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs6639811	intron_variant	1.0[CEU]; 0.932[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 0.969[TSI]
rs1967431	intron_variant; nc_transcript_variant; upstream_gene_variant	0.899[CEU]; 1.0[CHB]; 0.927[JPT]
rs5933826	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs941170	downstream_gene_variant; intron_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs802888		0.899[CEU]; 1.0[CHB]; 1.0[CHD]; 0.962[GIH]; 1.0[JPT]
rs802881		1.0[CEU]; 0.932[CHB]; 0.929[JPT]
rs7052687	downstream_gene_variant; intron_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs12008511		0.948[CEU]; 1.0[CHB]; 1.0[JPT]
rs7891838	intron_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs809104		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.834[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs4830613	intron_variant; nc_transcript_variant	0.899[CEU]; 1.0[CHB]; 1.0[CHD]; 0.834[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs6530058	downstream_gene_variant; upstream_gene_variant	0.948[CEU]; 1.0[CHB]; 1.0[JPT]
rs727520		1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs5978295	intron_variant; nc_transcript_variant	0.897[CEU]; 1.0[CHB]; 1.0[CHD]; 0.834[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs5978250	downstream_gene_variant; intron_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs5978404	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 0.969[TSI]
rs802904		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.963[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs5979036	intron_variant; nc_transcript_variant	0.899[CEU]; 1.0[CHB]; 1.0[CHD]; 0.861[GIH]; 0.927[JPT]; 0.935[MEX]; 0.969[TSI]
rs878561	downstream_gene_variant; intron_variant; nc_transcript_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.933[MEX]; 1.0[TSI]
rs7892767		0.944[CEU]; 1.0[CHB]; 1.0[JPT]
rs4830591	downstream_gene_variant; intron_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs17268974	intron_variant	0.918[CHB]; 1.0[JPT]
rs7057654	intron_variant; nc_transcript_variant; non_coding_exon_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs1638521		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs5979076		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs941171	downstream_gene_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs1465066	intron_variant; nc_transcript_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs5934913	intron_variant	0.923[ASW]; 1.0[CEU]; 0.932[CHB]; 0.969[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 0.969[TSI]
rs802893		0.946[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 1.0[JPT]; 0.934[MEX]; 1.0[TSI]
rs7892096	intron_variant; nc_transcript_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs802890		0.936[CEU]; 1.0[CHB]; 1.0[JPT]
rs7890234		0.899[CEU]; 0.93[CHB]; 1.0[CHD]; 0.825[GIH]; 0.927[JPT]; 0.937[MEX]; 0.968[TSI]
rs4240139	intron_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 0.969[CHD]; 0.825[GIH]; 0.927[JPT]; 1.0[TSI]
rs4830627		0.948[CEU]; 1.0[CHB]; 0.969[CHD]; 0.821[GIH]; 1.0[JPT]; 0.806[MEX]; 1.0[TSI]
rs5934743	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs7888782		1.0[ASW]; 0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]
rs802901		0.948[CEU]; 0.931[CHB]; 1.0[CHD]; 0.963[GIH]; 0.929[JPT]; 1.0[TSI]
rs7887251	intron_variant; nc_transcript_variant	0.899[CEU]; 1.0[CHB]; 0.927[JPT]
rs5934881	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 0.969[TSI]
rs6639817	intron_variant	1.0[CEU]; 0.871[CHB]; 0.969[CHD]; 0.963[GIH]; 1.0[JPT]; 0.937[MEX]; 0.937[TSI]
rs5978904	intron_variant; nc_transcript_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs802896		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs868756	downstream_gene_variant; intron_variant; missense_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs5934907	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 0.969[TSI]
rs802905		0.948[CEU]; 1.0[CHB]; 1.0[JPT]
rs5933793	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.82[MEX]; 1.0[TSI]
rs1880879		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs4830569	downstream_gene_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs5934850	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs4830608	intron_variant; nc_transcript_variant; non_coding_exon_variant	1.0[ASW]; 0.899[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 1.0[MEX]; 1.0[TSI]
rs2694751		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs5935099		0.948[CEU]; 0.932[CHB]; 0.926[GIH]; 0.929[JPT]; 0.814[TSI]
rs4504832	intron_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs802898		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 0.864[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs4500243	downstream_gene_variant; intron_variant; nc_transcript_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs5978831	intron_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.805[GIH]; 0.927[JPT]; 1.0[TSI]
rs7055130	downstream_gene_variant; intron_variant	0.899[CEU]; 0.932[CHB]; 0.924[JPT]
rs6530052	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[ASW]; 0.899[CEU]; 1.0[CHB]; 1.0[CHD]; 0.863[GIH]; 0.926[JPT]; 1.0[MEX]; 1.0[TSI]
rs4595309	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs2531956		0.948[CEU]; 1.0[CHB]; 1.0[JPT]
rs802894		1.0[CHB]; 1.0[JPT]
rs4830570	downstream_gene_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs6530046	intron_variant	0.947[CEU]; 1.0[CHB]; 0.921[JPT]
rs7881052		1.0[CHB]; 1.0[JPT]
rs5934904	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 0.969[TSI]
rs5978210	downstream_gene_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs1474468	downstream_gene_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs6530048	intron_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs4830580	intron_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs5978312		0.945[CEU]; 1.0[CHB]; 1.0[JPT]
rs883252	downstream_gene_variant; intron_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs6530042	downstream_gene_variant	1.0[ASW]; 0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.876[MEX]
rs12557556	intron_variant; nc_transcript_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.864[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs5934918	intron_variant	1.0[CEU]; 0.932[CHB]; 1.0[CHD]; 0.926[GIH]; 1.0[JPT]; 0.936[MEX]; 0.969[TSI]
rs5934842	intron_variant	0.896[CEU]; 1.0[CHB]; 1.0[JPT]
rs4830603	intron_variant; nc_transcript_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs1997184	intron_variant	0.899[CEU]; 0.932[CHB]; 1.0[CHD]; 0.834[GIH]; 0.927[JPT]; 0.937[MEX]; 1.0[TSI]
rs7887769		0.948[CEU]
rs2072326	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs802913		0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs5933830	intron_variant	1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 1.0[TSI]
rs4830607	downstream_gene_variant; intron_variant; nc_transcript_variant	0.899[CEU]; 1.0[CHB]; 0.927[JPT]
rs4830402	downstream_gene_variant; intron_variant; nc_transcript_variant	0.899[CEU]; 1.0[CHB]; 0.927[JPT]
rs802892		1.0[ASW]; 0.948[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 1.0[MEX]; 1.0[TSI]
rs1534275	intron_variant; nc_transcript_variant	0.899[CEU]; 0.932[CHB]; 0.927[JPT]
rs2379206	synonymous_variant	0.899[CEU]; 0.932[CHB]; 0.87[CHD]; 0.927[JPT]; 0.873[MEX]
rs5979331	intron_variant	1.0[CEU]; 0.931[CHB]; 0.969[CHD]; 1.0[GIH]; 1.0[JPT]; 0.937[MEX]; 0.969[TSI]
rs802915		0.948[CEU]; 1.0[CHB]; 1.0[JPT]