ADHDgene Database

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Large-scale studies

Data Summary

Published Variant
- SNP: 1391
- CNV: 398
- Others: 173
Published Gene: 359
Published Region: 128
Pathway by PBA: 8
Study: 361

Detail ...

SNP Report

Basic Info

Name	rs6014664 dbSNP Ensembl
Location	Chr20:54848977(Fwd)
Variant Alleles	C/T
Ancestral Allele	C
Functional Annotation	downstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000458731)
No. of Studies	1 (significant: 0; non-significant: 0; trend: 1)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Neale BM, 2010 (b)	T:C		GLM P-value=7.38E-06, meta-analysis P-value=0.2728 GLM P-value=7.38E-06, meta-analysis P-value=0.2728	One of the top 100 SNPs from imputed IMAGE II dataset One of the top 100 SNPs from imputed IMAGE II dataset	Trend

SNP related genes (count: 0)

SNPs in LD with rs6014664 (count: 40) View in gBrowse (chr20:54833431..54884338 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.

Literature-origin SNPs (count: 4)

rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]

rs6014657		1(0/0/1)	0.836[CEU]; 1.0[MEX]
rs1326022	nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.931[CHB]; 0.953[CHD]; 1.0[JPT]; 0.819[TSI]
rs1980818	upstream_gene_variant	1(0/1/0)	0.849[ASW]; 0.945[CEU]; 0.863[CHB]; 0.953[CHD]; 0.963[GIH]; 1.0[JPT]; 1.0[MEX]; 0.925[TSI]
rs1326021	nc_transcript_variant; non_coding_exon_variant	1(0/1/0)	0.931[CHB]; 0.953[CHD]; 1.0[JPT]; 0.819[TSI]

LD-proxies (count: 36)

rs_ID	Functional Annotation	r²[population]
rs6024783		0.802[CHB]; 0.952[CHD]; 1.0[JPT]
rs2870731	downstream_gene_variant	0.823[JPT]
rs1926069	downstream_gene_variant	0.863[CHB]; 1.0[CHD]; 0.928[GIH]; 1.0[JPT]; 0.9[TSI]
rs6024739	upstream_gene_variant	0.946[CEU]; 0.931[CHB]; 1.0[JPT]
rs2426608	intron_variant; nc_transcript_variant	0.863[CHB]; 1.0[JPT]
rs6127718		0.946[CEU]; 0.931[CHB]; 1.0[JPT]
rs6024768		0.927[CHB]; 1.0[JPT]
rs6123575		0.946[CEU]; 0.931[CHB]; 1.0[JPT]
rs6024763		0.93[CHB]; 1.0[JPT]
rs6127723	intron_variant; nc_transcript_variant	0.835[ASW]; 0.942[CEU]; 0.863[CHB]; 1.0[CHD]; 0.963[GIH]; 1.0[JPT]; 0.849[TSI]
rs6014658		0.836[CEU]
rs1409225	upstream_gene_variant	1.0[CEU]; 0.931[CHB]; 1.0[JPT]
rs6024743	downstream_gene_variant	1.0[CEU]; 0.854[CHB]; 1.0[JPT]
rs912998		0.941[CEU]
rs6123578	upstream_gene_variant	0.946[CEU]; 0.863[CHB]; 1.0[CHD]; 0.928[GIH]; 1.0[JPT]; 0.854[LWK]
rs6099065	downstream_gene_variant	0.902[CHB]; 0.888[JPT]
rs6127725		0.946[CEU]; 0.802[CHB]; 0.953[CHD]; 0.889[GIH]; 1.0[JPT]; 0.8[TSI]
rs2182355		0.946[CEU]; 0.931[CHB]; 1.0[JPT]
rs1409224	upstream_gene_variant	0.931[CHB]; 1.0[JPT]
rs4811686	downstream_gene_variant	0.835[CEU]; 1.0[CHB]; 1.0[JPT]
rs2094183	downstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs927809		0.92[CHB]; 1.0[CHD]; 0.924[GIH]; 0.916[TSI]
rs6069690		0.93[CHB]; 1.0[JPT]
rs6069692		0.927[CHB]; 1.0[JPT]
rs2007072	intron_variant; nc_transcript_variant	0.863[CHB]; 1.0[JPT]
rs6069689		0.931[CHB]; 1.0[CHD]; 0.928[GIH]; 1.0[JPT]; 0.9[TSI]
rs2426607	intron_variant; nc_transcript_variant	0.863[CHB]; 1.0[CHD]; 0.928[GIH]; 1.0[JPT]; 0.877[TSI]
rs6024751		0.944[CEU]; 1.0[JPT]
rs8122798		1.0[JPT]
rs2182356		0.931[CHB]; 1.0[JPT]
rs1326019	downstream_gene_variant	1.0[CEU]; 0.863[CHB]; 1.0[JPT]
rs6099064	downstream_gene_variant	0.946[CEU]; 0.927[CHB]; 1.0[JPT]
rs2094182	downstream_gene_variant	1.0[CEU]
rs1326023	upstream_gene_variant	0.931[CHB]; 1.0[JPT]
rs6069675		0.897[CEU]; 0.878[MEX]; 0.877[TSI]
rs2426606	intron_variant; nc_transcript_variant	0.863[CHB]; 1.0[CHD]; 0.928[GIH]; 1.0[JPT]; 0.877[TSI]