ADHDgene Database

SNP Report

Basic Info

Name	rs994856 dbSNP Ensembl
Location	Chr13:42708451(Fwd)
Variant Alleles	A/G
Ancestral Allele	A
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000540693; ENST00000379274; ENST00000337343; ENST00000261491) upstream_gene_variant(ENST00000536612)
No. of Studies	1 (significant: 1; non-significant: 0; trend: 0)
Source	Literature-origin

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result of Statistical Analysis
Weber H, 2011	G/A		Nominal P-value=0.012, Bonferroni P-value=0.277 Nominal P-value=0.012, Bonferroni P-value=0.277	significantly associated with ADHD but was not significant f...... significantly associated with ADHD but was not significant following Bonferroni correction More...	Significant

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (significant/non-significant/trend)
DGKH	diacylglycerol kinase, eta	13q13.3	1(1/0/0)

SNPs in LD with rs994856 (count: 11) View in gBrowse (chr13:42703394..42734894 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²>=0.8.


rs_ID	Functional Annotation	#studies(significant/non-significant/trend)	r²[population]
rs9525584	intron_variant; nc_transcript_variant	1(0/1/0)	0.822[CEU]

rs_ID	Functional Annotation	r²[population]
rs965256	intron_variant; nc_transcript_variant	1.0[CEU]; 1.0[CHB]; 1.0[JPT]
rs4624054	intron_variant; nc_transcript_variant	0.855[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.839[LWK]; 1.0[MEX]; 0.908[MKK]; 1.0[TSI]
rs1886811	intron_variant; nc_transcript_variant	0.855[ASW]; 1.0[CEU]; 1.0[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.839[LWK]; 0.953[MEX]; 0.908[MKK]; 1.0[TSI]
rs619659	intron_variant	0.812[CEU]
rs9533007	intron_variant; upstream_gene_variant	0.822[CEU]
rs9590666	intron_variant; upstream_gene_variant	0.881[JPT]
rs7986454	intron_variant	0.961[CEU]; 0.811[CHB]; 0.888[GIH]; 1.0[MEX]; 1.0[TSI]
rs3742261	intron_variant; splice_region_variant	0.855[ASW]; 1.0[CEU]; 0.911[CHB]; 1.0[CHD]; 1.0[GIH]; 1.0[JPT]; 0.839[LWK]; 1.0[MEX]; 0.891[MKK]; 1.0[TSI]
rs9590671	intron_variant; nc_transcript_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs716934	intron_variant; nc_transcript_variant	0.881[JPT]