ADHDgene Database
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Type:
  • Large-scale studies
  • Data Summary
  • Published Variant
  • Published Gene: 359
  • Published Region: 128
  • Pathway by PBA: 8
  • Study: 361

SNP Report

Basic Info
Name rs4363087 dbSNP Ensembl
Location Chr7:73118196(Fwd)
Variant Alleles T/C
Ancestral Allele C
Functional Annotation 3_prime_UTR_variant; NMD_transcript_variant; downstream_gene_variant; intron_variant; nc_transcript_variant; non_coding_exon_variant; upstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000436944; ENST00000423166)
NMD_transcript_variant(ENST00000436944)
downstream_gene_variant(ENST00000462135)
intron_variant(ENST00000395154; ENST00000491427; ENST00000480126; ENST00000470878; ENST00000395155; ENST00000494245; ENST00000496216; ENST00000222812; ENST00000395156; ENST00000461441)
nc_transcript_variant(ENST00000491427; ENST00000480126; ENST00000497980; ENST00000470878; ENST00000494245; ENST00000496216; ENST00000461441)
non_coding_exon_variant(ENST00000497980)
upstream_gene_variant(ENST00000484736; ENST00000491645)
No. of Studies 1 (significant: 1; non-significant: 0; trend: 0)
Source Literature-origin

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result of Statistical Analysis
Sanchez-Mora, C., 2012 P-value=0.003, Genotype12+22 vs11: P-value=0.001, OR(95%CI)=...... P-value=0.003, Genotype12+22 vs11: P-value=0.001, OR(95%CI)=1.44(1.15¨C1.80); Genotypes22 vs11+12: P-value=0.021, OR(95%CI)=1.45(1.06¨C1.98); allelic P-value=5.6e-04, OR(95%CI)=1.31(1.12¨C1.56) More... When adults with ADHD were considered, nominal differences w...... When adults with ADHD were considered, nominal differences were found for nine SNPs located in five genes. After applying a FDR of 15%, only the four SNPs in STX1A remained associated with adulthood ADHD. More... Significant

SNP related genes (count: 2)

Literature-origin genes (count: 1)

Genes from other sources Help (count: 1)


SNPs in LD with rs4363087 (count: 23) View in gBrowse (chr7:73087046..73125263 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2>=0.8.

Literature-origin SNPs (count: 2)

LD-proxies (count: 21)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: Feb 26, 2014